PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G245200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 208aa    MW: 23329.4 Da    PI: 8.6538
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G245200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.21.7e-3512105193
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        aCaaCk++r+kCa+ Cvlap fp+e++ +f++vhk+FG+snv+k++k l++++ re+a+++lv+eA++r+rdPv G++g ++k++ +l+  k
  Aqcoe1G245200.1.p  12 ACAACKHQRKKCAETCVLAPFFPSEKTPQFQAVHKVFGVSNVSKIIKGLKTHDeREKAIDTLVWEAQWRQRDPVLGCYGAYKKISDELKIFK 103
                        7************************************************98887*******************************9999877 PP

             DUF260  92 ae 93 
                        ++
  Aqcoe1G245200.1.p 104 NQ 105
                        65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.54611113IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-3412105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MQQKTNNGMH QACAACKHQR KKCAETCVLA PFFPSEKTPQ FQAVHKVFGV SNVSKIIKGL  60
KTHDEREKAI DTLVWEAQWR QRDPVLGCYG AYKKISDELK IFKNQHITAP TYSDAMLYKT  120
GLIGWTNNNV PGAEINFNNP NYIDNNGNFP MESIPFSYAQ GQNNGVQERD TVPVSICSGN  180
SMSCLSQQFY HNPDQYARMN GKIDKAT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279241.14e-64PREDICTED: LOB domain-containing protein 2
SwissprotQ9LNB96e-43LBD2_ARATH; LOB domain-containing protein 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-44LOB domain-containing protein 2